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    LOC4348831 hypersensitive-induced reaction 1 protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348831, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4348831
    Gene description
    hypersensitive-induced reaction 1 protein
    Locus tag
    OSNPB_100464000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348831 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (17784032..17786565, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (17117279..17120140, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936559 Neighboring gene uncharacterized LOC136353559 Neighboring gene 2-oxoadipate dioxygenase/decarboxylase, chloroplastic/amyloplastic-like Neighboring gene uncharacterized LOC112936634 Neighboring gene uncharacterized LOC4348832 Neighboring gene membrane protein PM19L-like Neighboring gene bifunctional riboflavin kinase/FMN phosphatase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    hypersensitive-induced reaction 1 protein
    Names
    Os10g0464000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      17784032..17786565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758997.3 → XP_015614483.1  hypersensitive-induced reaction 1 protein

      UniProtKB/TrEMBL
      A2Z893, A3C5I7, Q0IX60, Q8H918
      Conserved Domains (1) summary
      cd03407
      Location:17 → 284
      SPFH_like_u4; Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

    2. XM_066304674.1 → XP_066160771.1  hypersensitive-induced reaction 1 protein

      UniProtKB/TrEMBL
      A2Z893, A3C5I7, Q0IX60, Q8H918
    Nucleotide Protein
    Heading Accession and Version

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