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    LOC4348957 prefoldin subunit 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348957, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4348957
    Gene description
    prefoldin subunit 5
    Locus tag
    OSNPB_100488100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 24.5), flower buds (RPKM 24.0) and 6 other tissues See more
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    Genomic context

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    See LOC4348957 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (19143510..19153296)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (18475016..18484807)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4348955 Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene vacuolar protein sorting-associated protein 52 A Neighboring gene uncharacterized LOC4348959

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA polymerase I assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in RNA polymerase II core complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in RNA polymerase III assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of prefoldin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prefoldin subunit 5
    Names
    Os10g0488100
    probable prefoldin subunit 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      19143510..19153296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759487.3 → XP_015614973.1  prefoldin subunit 5

      UniProtKB/TrEMBL
      A0A5S6RAW7, Q109H9, Q7XD74, Q8W5I6
      Conserved Domains (1) summary
      TIGR00293
      Location:14 → 140
      TIGR00293; prefoldin, archaeal alpha subunit/eukaryotic subunit 5
    Nucleotide Protein
    Heading Accession and Version

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