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    LOC4352630 uncharacterized LOC4352630 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352630, updated on 21-Dec-2023

    Summary

    Gene symbol
    LOC4352630
    Gene description
    uncharacterized LOC4352630
    Locus tag
    OSNPB_120578800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 1.6), flower buds (RPKM 1.2) and 6 other tissues See more
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    Genomic context

    See LOC4352630 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (23952249..23956078, complement)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4352628 Neighboring gene uncharacterized LOC4352629 Neighboring gene protein LEO1 homolog Neighboring gene uncharacterized LOC112937310

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC4352630
    Names
    Os12g0578800

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      23952249..23956078 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763523.1XP_015619009.1  uncharacterized protein LOC4352630 isoform X2

      UniProtKB/TrEMBL
      A2ZM13
      Conserved Domains (3) summary
      smart00355
      Location:3859
      ZnF_C2H2; zinc finger
      sd00017
      Location:1232
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13912
      Location:1035
      zf-C2H2_6; C2H2-type zinc finger
    2. XM_015763522.1XP_015619008.1  uncharacterized protein LOC4352630 isoform X1

      UniProtKB/TrEMBL
      A2ZM13, Q0IMC0, Q2QN52
      Conserved Domains (3) summary
      sd00017
      Location:1232
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:7192
      zf-C2H2; Zinc finger, C2H2 type
      pfam13912
      Location:275298
      zf-C2H2_6; C2H2-type zinc finger