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    LOC4324853 delta-1-pyrroline-5-carboxylate synthase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324853, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324853
    Gene description
    delta-1-pyrroline-5-carboxylate synthase 2-like
    Locus tag
    OSNPB_010848200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P5CS2; OsP5CS2; OsJ_04075
    Expression
    Broad expression in flowers (RPKM 19.8), flower buds (RPKM 15.9) and 5 other tissues See more
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    Genomic context

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    See LOC4324853 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37056153..37065572)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (36430935..36440402)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene aldo-keto reductase family 4 member C10 Neighboring gene PRA1 family protein A1 Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene pentatricopeptide repeat-containing protein CRR2, chloroplastic Neighboring gene BEL1-like homeodomain protein 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glutamate 5-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glutamate-5-semialdehyde dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proline biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    delta-1-pyrroline-5-carboxylate synthase 2
    Names
    Delta-1-pyrroline-5-carboxylate synthase 2
    Os01g0848200
    P0005H10.23
    putative delta-1-pyrroline-5-carboxylate synthetase
    NP_001415094.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428165.1 → NP_001415094.1  delta-1-pyrroline-5-carboxylate synthase 2

      Status: VALIDATED

      Source sequence(s)
      AK101230, CI515805
      UniProtKB/Swiss-Prot
      Q941T1
      UniProtKB/TrEMBL
      B8AC46

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      37056153..37065572
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q941T1.1 GenPept UniProtKB/Swiss-Prot:Q941T1

    Gene LinkOut

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    Research Materials