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    LOC4328135 cyclin-dependent kinase A-2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328135, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328135
    Gene description
    cyclin-dependent kinase A-2-like
    Locus tag
    OSNPB_020123100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CDC2-2; CDKA-2; CDKA;2; Rcdc2-2; p34cdc2; CDC2Os-2
    Expression
    Broad expression in roots before flowering (RPKM 12.7), flower buds (RPKM 10.2) and 5 other tissues See more
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    Genomic context

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    See LOC4328135 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1214497..1218109)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1207613..1211214)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene serine/arginine-rich splicing factor RS41 Neighboring gene ribosomal RNA small subunit methyltransferase, chloroplastic Neighboring gene peroxisome biogenesis protein 16 Neighboring gene eukaryotic translation initiation factor 3 subunit C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of cDNA clones encoding cdc2 homologues from Oryza sativa: a functional homologue and cognate variants. Hashimoto J, et al. Mol Gen Genet, 1992 May. PMID 1376401
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cyclin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G1/S transition of mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of G2/M transition of mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cyclin-dependent protein kinase holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-dependent kinase A-2
    Names
    Cell division control protein 2 homolog 2
    LOC_Os02g03060
    P0575F10.10-1
    P0575F10.10-2
    putative p34cdc2
    NP_001393350.1
    XP_015623587.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406421.1 → NP_001393350.1  cyclin-dependent kinase A-2

      Status: VALIDATED

      Source sequence(s)
      C22678, CF306524, CF316758, CI310352
      UniProtKB/Swiss-Prot
      B7ERM3, P29619, Q0E4E3, Q6Z721, Q6Z722
      UniProtKB/TrEMBL
      A2X0B2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      1214497..1218109
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768101.3 → XP_015623587.1  cyclin-dependent kinase A-2 isoform X1

      UniProtKB/TrEMBL
      A2X0B2, B7E9N8
      Conserved Domains (1) summary
      PLN00009
      Location:86 → 376
      PLN00009; cyclin-dependent kinase A; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P29619.1 GenPept UniProtKB/Swiss-Prot:P29619

    Gene LinkOut

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