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    LOC4327275 UPF0481 protein At3g47200 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327275, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4327275
    Gene description
    UPF0481 protein At3g47200
    Locus tag
    OSNPB_010319400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327275 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (12199493..12203778, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (12157461..12159087, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354988 Neighboring gene uncharacterized LOC107281404 Neighboring gene UPF0481 protein At3g47200 Neighboring gene protein translocase subunit SECA1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    UPF0481 protein At3g47200
    Names
    B1153F04.26
    Os01g0319400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      12199493..12203778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305213.1 → XP_066161310.1  UPF0481 protein At3g47200

      UniProtKB/TrEMBL
      A2WP55, B7EHQ7, Q0JN76, Q94D66

    2. XM_015791842.3 → XP_015647328.1  UPF0481 protein At3g47200

      UniProtKB/TrEMBL
      A2WP55, B7EHQ7, Q0JN76, Q94D66
      Conserved Domains (1) summary
      pfam03140
      Location:18 → 421
      DUF247; Plant protein of unknown function
    Nucleotide Protein
    Heading Accession and Version

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