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    LOC4329977 UDP-rhamnose/UDP-galactose transporter 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329977, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4329977
    Gene description
    UDP-rhamnose/UDP-galactose transporter 5
    Locus tag
    OSNPB_020614500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ2055_H10.27-1
    Expression
    Broad expression in roots before flowering (RPKM 68.4), leaves after flowering (RPKM 66.8) and 6 other tissues See more
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    Genomic context

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    See LOC4329977 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24752966..24756335, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24270238..24273679, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene AP2-like ethylene-responsive transcription factor PLT2 Neighboring gene protein TIC 20-I, chloroplastic Neighboring gene filament-like plant protein 7 Neighboring gene uncharacterized LOC9266680

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-galactose transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-rhamnose/UDP-galactose transporter 5
    Names
    Os02g0614500
    P0407A09.6-1
    UDP-galactose transporter 2
    putative transmembrane protein
    transmembrane protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24752966..24756335 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770902.3 → XP_015626388.1  UDP-rhamnose/UDP-galactose transporter 5

      UniProtKB/TrEMBL
      B8AFF6, B9F127, Q6K5X9
      Conserved Domains (1) summary
      pfam03151
      Location:18 → 298
      TPT; Triose-phosphate Transporter family

    2. XM_015770904.2 → XP_015626390.1  UDP-rhamnose/UDP-galactose transporter 5

      UniProtKB/TrEMBL
      B8AFF6, B9F127, Q6K5X9
      Conserved Domains (1) summary
      pfam03151
      Location:18 → 298
      TPT; Triose-phosphate Transporter family

    3. XM_015770903.2 → XP_015626389.1  UDP-rhamnose/UDP-galactose transporter 5

      UniProtKB/TrEMBL
      B8AFF6, B9F127, Q6K5X9
      Conserved Domains (1) summary
      pfam03151
      Location:18 → 298
      TPT; Triose-phosphate Transporter family

    4. XM_066307187.1 → XP_066163284.1  UDP-rhamnose/UDP-galactose transporter 5

      UniProtKB/TrEMBL
      B8AFF6, B9F127, Q6K5X9
    Nucleotide Protein
    Heading Accession and Version

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