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    LOC4344216 protein NETWORKED 3C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344216, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344216
    Gene description
    protein NETWORKED 3C
    Locus tag
    OSNPB_070666600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 18.6), leaves after flowering (RPKM 14.1) and 5 other tissues See more
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    Genomic context

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    See LOC4344216 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28374313..28377574, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28146456..28149742, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344215 Neighboring gene uncharacterized LOC9267970 Neighboring gene sodium/hydrogen exchanger 1-like Neighboring gene tubby-like F-box protein 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NETWORKED 3C
    Names
    Os07g0666600
    P0450A04.120
    protein NETWORKED 3A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28374313..28377574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789668.3 → XP_015645154.1  protein NETWORKED 3C

      UniProtKB/TrEMBL
      A2YPP9, A3BN67, Q8H487
      Conserved Domains (2) summary
      PTZ00121
      Location:135 → 276
      PTZ00121; MAEBL; Provisional
      pfam07765
      Location:10 → 82
      KIP1; KIP1-like protein

    2. XM_015789665.3 → XP_015645151.1  protein NETWORKED 3C

      UniProtKB/TrEMBL
      A2YPP9, A3BN67, Q8H487
      Conserved Domains (2) summary
      PTZ00121
      Location:135 → 276
      PTZ00121; MAEBL; Provisional
      pfam07765
      Location:10 → 82
      KIP1; KIP1-like protein

    3. XM_015789666.3 → XP_015645152.1  protein NETWORKED 3C

      UniProtKB/TrEMBL
      A2YPP9, A3BN67, Q8H487
      Conserved Domains (2) summary
      PTZ00121
      Location:135 → 276
      PTZ00121; MAEBL; Provisional
      pfam07765
      Location:10 → 82
      KIP1; KIP1-like protein

    4. XM_015789667.3 → XP_015645153.1  protein NETWORKED 3C

      UniProtKB/TrEMBL
      A2YPP9, A3BN67, Q8H487
      Conserved Domains (2) summary
      PTZ00121
      Location:135 → 276
      PTZ00121; MAEBL; Provisional
      pfam07765
      Location:10 → 82
      KIP1; KIP1-like protein
    Nucleotide Protein
    Heading Accession and Version

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