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    LOC9268562 uncharacterized LOC9268562 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9268562, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC9268562
    Gene description
    uncharacterized LOC9268562
    Locus tag
    OSNPB_020580800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1115_A05.11-1
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    Genomic context

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    See LOC9268562 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (22846882..22848913, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (22365314..22367376, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene flavin-containing monooxygenase FMO GS-OX-like 9 Neighboring gene uncharacterized LOC4329779 Neighboring gene protein NRT1/ PTR FAMILY 6.4 Neighboring gene uncharacterized LOC4329782

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC9268562
    Names
    B1267B06.36-1
    Os02g0580800
    putative protein-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      22846882..22848913 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771791.3 → XP_015627277.1  uncharacterized protein LOC9268562

      UniProtKB/TrEMBL
      A3A8D5
      Conserved Domains (2) summary
      PLN02248
      Location:291 → 351
      PLN02248; cellulose synthase-like protein
      cd16618
      Location:276 → 319
      mRING-HC-C4C4_CNOT4; Modified RING finger, HC subclass (C4C4-type), found in CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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