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    LOC4343016 uncharacterized LOC4343016 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343016, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4343016
    Gene description
    uncharacterized LOC4343016
    Locus tag
    OSNPB_070414200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 2.7), flowers (RPKM 2.6) and 6 other tissues See more
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    Genomic context

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    See LOC4343016 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (13212913..13223354, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (13057841..13068304, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357175 Neighboring gene uncharacterized LOC136357266 Neighboring gene phenolic glucoside malonyltransferase 1 Neighboring gene uncharacterized LOC136357267 Neighboring gene uncharacterized LOC4343017 Neighboring gene F-actin-capping protein subunit alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4343016
    Names
    OSJNBa0077F02.121
    Os07g0414200
    methyltransferase-like protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      13212913..13223354 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789074.3 → XP_015644560.1  uncharacterized protein LOC4343016 isoform X3

      UniProtKB/TrEMBL
      A0A0P0X590, B8B5F7, Q0D703, Q7EYV5
      Conserved Domains (1) summary
      pfam08242
      Location:96 → 230
      Methyltransf_12; Methyltransferase domain

    2. XM_015789077.3 → XP_015644563.1  uncharacterized protein LOC4343016 isoform X6

      UniProtKB/TrEMBL
      B8B5F7
      Conserved Domains (2) summary
      COG0500
      Location:58 → 260
      SmtA; SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]
      pfam08242
      Location:96 → 230
      Methyltransf_12; Methyltransferase domain

    3. XM_015789071.3 → XP_015644557.1  uncharacterized protein LOC4343016 isoform X1

      UniProtKB/TrEMBL
      B8B5F7
      Conserved Domains (1) summary
      pfam08242
      Location:96 → 230
      Methyltransf_12; Methyltransferase domain

    4. XM_015789075.3 → XP_015644561.1  uncharacterized protein LOC4343016 isoform X4

      UniProtKB/TrEMBL
      B8B5F7
      Conserved Domains (1) summary
      pfam08242
      Location:96 → 230
      Methyltransf_12; Methyltransferase domain

    5. XM_015789076.3 → XP_015644562.1  uncharacterized protein LOC4343016 isoform X5

      UniProtKB/TrEMBL
      B8B5F7
      Conserved Domains (1) summary
      pfam08242
      Location:96 → 230
      Methyltransf_12; Methyltransferase domain

    6. XM_066312272.1 → XP_066168369.1  uncharacterized protein LOC4343016 isoform X2

      UniProtKB/TrEMBL
      B8B5F7

    RNA

    1. XR_010742480.1 RNA Sequence

    2. XR_010742484.1 RNA Sequence

    3. XR_010742482.1 RNA Sequence

    4. XR_010742483.1 RNA Sequence

    5. XR_010742481.1 RNA Sequence

    6. XR_010742479.1 RNA Sequence

    7. XR_010742478.1 RNA Sequence

    8. XR_010742477.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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