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    LOC4342338 L-type lectin-domain containing receptor kinase SIT2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342338, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4342338
    Gene description
    L-type lectin-domain containing receptor kinase SIT2-like
    Locus tag
    OSNPB_070132500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1606_D04.122
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    Genomic context

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    See LOC4342338 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1723047..1725912)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1711869..1714581)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene EPIDERMAL PATTERNING FACTOR-like protein 2 Neighboring gene uncharacterized LOC112939567 Neighboring gene uncharacterized LOC9267036 Neighboring gene L-type lectin-domain containing receptor kinase SIT2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane receptor protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to bacterium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response to oomycetes IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-type lectin-domain containing receptor kinase SIT2-like
    Names
    L-type lectin-domain containing receptor kinase IV.2
    Os07g0132500
    putative receptor-type protein kinase LRK1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      1723047..1725912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789441.3 → XP_015644927.1  L-type lectin-domain containing receptor kinase SIT2-like

      UniProtKB/TrEMBL
      Q7F165
      Conserved Domains (3) summary
      cd06899
      Location:29 → 276
      lectin_legume_LecRK_Arcelin_ConA; legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor
      pfam00069
      Location:372 → 601
      Pkinase; Protein kinase domain
      cl21453
      Location:378 → 644
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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