U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4351289 regulatory-associated protein of TOR 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351289, updated on 16-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4351289
    Gene description
    regulatory-associated protein of TOR 1-like
    Locus tag
    OSNPB_120110000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RAPTOR1; RAPTOR2; OsRAPTOR1; OsRAPTOR2
    Annotation information
    not in current annotation release
    Expression
    Ubiquitous expression in roots after flowering (RPKM 20.2), leaves before flowering (RPKM 17.4) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4351289 in Genome Data Viewer
    Location:
    chromosome: 12
    Annotation release Status Assembly Chr Location
    102 latest, but not current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (541262..550877, complement)

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    regulatory-associated protein of TOR 2
    Names
    LOC_Os12g01922
    Os12g0110050
    Protein RAPTOR 1
    Protein RAPTOR 2
    Regulatory-associated protein of TOR 2
    regulatory-associated protein of TOR 1
    transducin/WD-40 repeat protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423296.1 → NP_001410225.1  regulatory-associated protein of TOR 2

      Status: VALIDATED

      Source sequence(s)
      AP014968
      UniProtKB/TrEMBL
      B9GBH2
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0IQN5.2 GenPept UniProtKB/Swiss-Prot:Q0IQN5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials