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    LOC4339986 uncharacterized LOC4339986 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339986, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4339986
    Gene description
    uncharacterized LOC4339986
    Locus tag
    OSNPB_060128500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0538C01.7
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 21.3), flower buds (RPKM 20.4) and 6 other tissues See more
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    Genomic context

    See LOC4339986 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1669712..1673238)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1512800..1516435)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene ABC transporter B family member 25, mitochondrial Neighboring gene uncharacterized LOC136356935 Neighboring gene uncharacterized LOC4339985 Neighboring gene probable E3 ubiquitin-protein ligase XBOS36 Neighboring gene uncharacterized LOC4339989

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial translation IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in mitochondrial ribosome IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    uncharacterized protein LOC4339986
    Names
    39S ribosomal protein L47, mitochondrial
    Os06g0128500
    ribosomal protein L29 protein-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1669712..1673238
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786066.2XP_015641552.1  uncharacterized protein LOC4339986

      UniProtKB/TrEMBL
      A0A0P0WS52, Q658I1
      Conserved Domains (1) summary
      cl09943
      Location:38125
      Ribosomal_L29_HIP; Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it ...