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    LOC4333947 F-box protein At5g03100 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333947, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4333947
    Gene description
    F-box protein At5g03100
    Locus tag
    OSNPB_030722800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 10.5), flower buds (RPKM 10.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (30209751..30217313, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29328998..29336549, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene cyclase-associated protein 1 Neighboring gene uncharacterized LOC9267902 Neighboring gene SCARECROW-LIKE protein 7-like Neighboring gene uncharacterized LOC4333949

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box protein At5g03100
    Names
    F-box domain-containing protein
    Os03g0722800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      30209751..30217313 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777464.3 → XP_015632950.1  F-box protein At5g03100 isoform X2

      UniProtKB/TrEMBL
      A0A8J8XST3, B9FB94, Q0DP10, Q10DR5
      Conserved Domains (2) summary
      smart00256
      Location:12 → 48
      FBOX; A Receptor for Ubiquitination Targets
      sd00032
      Location:158 → 180
      LRR_2; leucine-rich repeat [structural motif]

    2. XM_066308986.1 → XP_066165083.1  F-box protein At5g03100 isoform X1

      UniProtKB/TrEMBL
      Q0DP10

    3. XM_015777466.3 → XP_015632952.1  F-box protein At5g03100 isoform X2

      UniProtKB/TrEMBL
      A0A8J8XST3, B9FB94, Q0DP10, Q10DR5
      Conserved Domains (2) summary
      smart00256
      Location:12 → 48
      FBOX; A Receptor for Ubiquitination Targets
      sd00032
      Location:158 → 180
      LRR_2; leucine-rich repeat [structural motif]

    4. XM_066308987.1 → XP_066165084.1  F-box protein At5g03100 isoform X2

      UniProtKB/TrEMBL
      A0A8J8XST3, B9FB94, Q0DP10, Q10DR5
    Nucleotide Protein
    Heading Accession and Version

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