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    LOC4326296 light-mediated development protein DET1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326296, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326296
    Gene description
    light-mediated development protein DET1
    Locus tag
    OSNPB_010104600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 18.2), roots after flowering (RPKM 16.8) and 6 other tissues See more
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    Genomic context

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    See LOC4326296 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (253116..260984, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (248706..256873, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene ricin B-like lectin R40G3 Neighboring gene NAC domain-containing protein 20-like Neighboring gene protein THALLO Neighboring gene alcohol acyltransferase 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The De-Etiolated 1 Homolog of Arabidopsis Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice. Zang G, et al. Plant Physiol, 2016 Jun. PMID 27208292, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-like ligase-substrate adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cullin-RING ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    light-mediated development protein DET1
    Names
    Os01g0104600
    P0436E04.25
    putative tDET1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      253116..260984 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766622.3 → XP_015622108.1  light-mediated development protein DET1 isoform X2

      UniProtKB/TrEMBL
      A0A0P0UWV9, B9EYS1, D0EW63, Q658D0
      Conserved Domains (1) summary
      pfam09737
      Location:123 → 510
      Det1; De-etiolated protein 1 Det1

    2. XM_015766621.3 → XP_015622107.1  light-mediated development protein DET1 isoform X1

      UniProtKB/TrEMBL
      B9EYS1
      Conserved Domains (1) summary
      pfam09737
      Location:123 → 511
      Det1; De-etiolated protein 1 Det1
    Nucleotide Protein
    Heading Accession and Version

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