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    LOC4351698 GDP-L-galactose phosphorylase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351698, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351698
    Gene description
    GDP-L-galactose phosphorylase 2
    Locus tag
    OSNPB_120190000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4351698 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (4562719..4566810, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (4533065..4537238, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4351696 Neighboring gene uncharacterized LOC4351697 Neighboring gene O-fucosyltransferase 38 Neighboring gene psbP domain-containing protein 4, chloroplastic Neighboring gene uncharacterized LOC4351701

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GDP-D-glucose phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDP-L-galactose phosphorylase 2
    Names
    Os12g0190000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      4562719..4566810 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764404.3 → XP_015619890.1  GDP-L-galactose phosphorylase 2

      UniProtKB/TrEMBL
      B8BNI6, Q0IPK8, Q2QWM9
      Conserved Domains (1) summary
      PLN03103
      Location:4 → 403
      PLN03103; GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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