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    LOC4327399 transcription factor MYB3R-2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327399, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327399
    Gene description
    transcription factor MYB3R-2-like
    Locus tag
    OSNPB_010841500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MYB15; MYB3R-2; OsJ_04034; OsMYB3R-2
    Expression
    Ubiquitous expression in roots after flowering (RPKM 12.2), leaves before flowering (RPKM 11.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (36747872..36753575)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (36122783..36128483)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene pentatricopeptide repeat-containing protein At4g11690-like Neighboring gene triosephosphate isomerase, cytosolic-like Neighboring gene elicitor-responsive protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor MYB3R-2
    Names
    LOC_Os01g62410
    Myb transcription factor
    Myb-like protein
    Os01g0841500
    P0408C03.41
    Transcription factor MYB3R-2
    myb-related protein MYB3R-2
    transcription factor MYB122

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406319.1 → NP_001393248.1  transcription factor MYB3R-2

      Status: VALIDATED

      Source sequence(s)
      CB662884, CI622918, FJ940212
      UniProtKB/Swiss-Prot
      D6BV30, Q0JHU7, Q5N9U1, Q5QT31
      UniProtKB/TrEMBL
      B8AC11

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      36747872..36753575
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JHU7.1 GenPept UniProtKB/Swiss-Prot:Q0JHU7

    Gene LinkOut

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    Research Materials