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    LOC4337275 protein EMSY-LIKE 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337275, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337275
    Gene description
    protein EMSY-LIKE 3
    Locus tag
    OSNPB_040659400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    24K23.15
    Expression
    Ubiquitous expression in roots after flowering (RPKM 24.1), leaves before flowering (RPKM 20.2) and 6 other tissues See more
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    Genomic context

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    See LOC4337275 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34164993..34169197)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33645081..33649299)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268485 Neighboring gene cysteine-rich receptor-like protein kinase 6 Neighboring gene probable protein phosphatase 2C 45 Neighboring gene BTB/POZ and MATH domain-containing protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein EMSY-LIKE 3
    Names
    Os04g0659400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34164993..34169197
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779838.3 → XP_015635324.1  protein EMSY-LIKE 3

      UniProtKB/TrEMBL
      A0A0P0WFY1, A2XYI7, Q01I03, Q0J9D7, Q7FAY7, Q8S3P2
      Conserved Domains (2) summary
      pfam03735
      Location:55 → 122
      ENT; ENT domain
      cd20404
      Location:205 → 252
      Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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