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    LOC4344834 glucose-6-phosphate/phosphate translocator 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344834, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344834
    Gene description
    glucose-6-phosphate/phosphate translocator 2, chloroplastic
    Locus tag
    OSNPB_080187800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1099H05.2
    Expression
    Broad expression in milk grains (RPKM 199.3), roots before flowering (RPKM 181.6) and 6 other tissues See more
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    Genomic context

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    See LOC4344834 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (5189893..5193874)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (5139622..5143701)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein ROC1-like Neighboring gene polyadenylation and cleavage factor homolog 4 Neighboring gene fatty acid desaturase 4, chloroplastic Neighboring gene CRS2-associated factor 2, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphoglycerate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables triose-phosphate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glucose-6-phosphate/phosphate translocator 2, chloroplastic
    Names
    Os08g0187800
    P0020B10.26

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      5189893..5193874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794847.3 → XP_015650333.1  glucose-6-phosphate/phosphate translocator 2, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0XCJ5, Q6YZC3, Q94JS6
      Conserved Domains (1) summary
      pfam03151
      Location:94 → 383
      TPT; Triose-phosphate Transporter family
    Nucleotide Protein
    Heading Accession and Version

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