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    LOC4327165 common plant regulatory factor 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327165, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327165
    Gene description
    common plant regulatory factor 1
    Locus tag
    OSNPB_010658900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OSBZ8; P0684E06.7
    Expression
    Ubiquitous expression in mature seeds (RPKM 11.0), roots before flowering (RPKM 8.0) and 6 other tissues See more
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    Genomic context

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    See LOC4327165 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (27382527..27387942, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (26800062..26805535, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene sphinganine C4-monooxygenase 2 Neighboring gene putative glucose-6-phosphate 1-epimerase Neighboring gene V-type proton ATPase subunit E Neighboring gene uncharacterized LOC136357209

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A rice bZIP protein, designated OSBZ8, is rapidly induced by abscisic acid. Nakagawa H, et al. Plant J, 1996 Feb. PMID 8820608
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    common plant regulatory factor 1
    Names
    G-box binding factor
    G-box binding protein
    Os01g0658900
    putative G-box binding factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      27382527..27387942 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794975.3 → XP_015650461.1  common plant regulatory factor 1

      UniProtKB/TrEMBL
      B9EYF3, Q40645, Q7E0Y1
      Conserved Domains (3) summary
      smart00338
      Location:224 → 287
      BRLZ; basic region leucin zipper
      TIGR02169
      Location:167 → 325
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      pfam07777
      Location:1 → 93
      MFMR; G-box binding protein MFMR

    2. XM_015794985.3 → XP_015650471.1  common plant regulatory factor 1

      UniProtKB/TrEMBL
      B9EYF3, Q40645, Q7E0Y1
      Conserved Domains (3) summary
      smart00338
      Location:224 → 287
      BRLZ; basic region leucin zipper
      TIGR02169
      Location:167 → 325
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      pfam07777
      Location:1 → 93
      MFMR; G-box binding protein MFMR
    Nucleotide Protein
    Heading Accession and Version

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