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    LOC4340223 protein disulfide isomerase-like 1-5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340223, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4340223
    Gene description
    protein disulfide isomerase-like 1-5
    Locus tag
    OSNPB_060163400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PDIL1-5; PDIL3-1; OsPDIL1-5; OsPDIL3-1
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    Genomic context

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    See LOC4340223 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (3359783..3364386)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (3199309..3203956)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4340221 Neighboring gene uncharacterized LOC4340222 Neighboring gene uncharacterized LOC136357072 Neighboring gene U4 spliceosomal RNA Neighboring gene subtilisin-like protease SBT6.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein disulfide isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to endoplasmic reticulum stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein disulfide isomerase-like 1-5
    Names
    LOC_Os06g06790
    P0681F10.44
    Protein disulfide isomerase-like 3-1
    putative protein disulphide isomerase
    NP_001408155.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421226.1 → NP_001408155.1  protein disulfide isomerase-like 1-5 precursor

      Status: VALIDATED

      Source sequence(s)
      AK073970, AP014962, CI135283, CI518769, D22477
      UniProtKB/Swiss-Prot
      A0A0P0WSS8, Q5WA72
      UniProtKB/TrEMBL
      A2Y9P5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      3359783..3364386
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5WA72.1 GenPept UniProtKB/Swiss-Prot:Q5WA72

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