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    LOC4345993 lipoxygenase 7, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345993, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4345993
    Gene description
    lipoxygenase 7, chloroplastic-like
    Locus tag
    OSNPB_080508800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LOX8; LOX2.1; CM-LOX1; lox2osPil
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    Genomic context

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    See LOC4345993 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (25362209..25370230, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (25216458..25224188, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene pre-rRNA-processing protein TSR2 Neighboring gene ETHYLENE INSENSITIVE 3-like 3 protein Neighboring gene probable lipoxygenase 8, chloroplastic Neighboring gene beta-glucosidase 27-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Silencing OsHI-LOX makes rice more susceptible to chewing herbivores, but enhances resistance to a phloem feeder. Zhou G, et al. Plant J, 2009 Nov. PMID 19656341
    2. A novel lipoxygenase from rice. Primary structure and specific expression upon incompatible infection with rice blast fungus. Peng YL, et al. J Biol Chem, 1994 Feb 4. PMID 7508918
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipoxygenase 7, chloroplastic
    Names
    B1168A08.24
    LOC_Os08g39840
    Lipoxygenase, chloroplast
    chloroplast 13-lipoxygenase
    NP_001390579.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403650.1 → NP_001390579.1  lipoxygenase 7, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      CB644710, CB645675, CB658842, CB669849, CI658926, D14000
      UniProtKB/Swiss-Prot
      P38419, Q6YVT0, Q9XHM7
      UniProtKB/TrEMBL
      A0A8U0WPN0, B9G1Q3, D1G597, Q0J4K2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      25362209..25370230 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P38419.2 GenPept UniProtKB/Swiss-Prot:P38419

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials