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    LOC4343851 MADS-box transcription factor 18-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343851, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343851
    Gene description
    MADS-box transcription factor 18-like
    Locus tag
    OSNPB_070605200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MADS2; MADS18; MADS28; OsMADS2; FDRMADS7; OsMADS18; OsMADS28; OsJ_25046
    Expression
    Broad expression in leaves before flowering (RPKM 94.7), flowers (RPKM 44.5) and 5 other tissues See more
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    Genomic context

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    See LOC4343851 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (25013420..25018829)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24788461..24793884)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene UDP-arabinopyranose mutase 3-like Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene uncharacterized LOC107281531 Neighboring gene protein EGG APPARATUS-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ. Yadav SR, et al. Genetics, 2007 May. PMID 17409064, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These data implicate the developmentally late spatially restricted accumulation of OsMADS2 transcripts in the differentiating lodicule to control growth of these regions.
      Title: Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mADS-box transcription factor 18
    Names
    LOC_Os07g41370
    MADS box protein, MADS2
    MADS box protein, MADS28
    MADS-box protein 2
    MADS-box protein 28
    MADS-box transcription factor 18
    OSJNBb0040H10.26

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422260.1 → NP_001409189.1  mADS-box transcription factor 18

      Status: VALIDATED

      Source sequence(s)
      AK064704, AP014963, CI112105, CI274325, CI517901
      UniProtKB/Swiss-Prot
      A2YNI2, B9FYB4, Q0D4T4, Q6Z4G0, Q9M7C5, Q9SEV1, Q9SMB3
      UniProtKB/TrEMBL
      B8B8B3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      25013420..25018829
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0D4T4.1 GenPept UniProtKB/Swiss-Prot:Q0D4T4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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