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    LOC4352083 chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352083, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4352083
    Gene description
    chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
    Locus tag
    OSNPB_120420200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352083 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (13531288..13533944)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (13103627..13106295)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene phosphoglycolate phosphatase 1A, chloroplastic Neighboring gene beta-glucosidase 38-like Neighboring gene tyrosine-protein phosphatase DSP3 Neighboring gene photosystem I reaction center subunit XI, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Newly identified CSP41b gene localized in chloroplasts affects leaf color in rice. Mei J, et al. Plant Sci, 2017 Mar. PMID 28167036
    2. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-glucose 4-epimerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in galactose catabolic process via UDP-galactose IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
    Names
    Os12g0420200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423467.1 → NP_001410396.1  chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      CB673897, CB673898, CB683045, CI598725
      UniProtKB/TrEMBL
      B9GCV3, Q2QSR7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      13531288..13533944
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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