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    LOC4348732 pentatricopeptide repeat-containing protein At5g08305 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348732, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4348732
    Gene description
    pentatricopeptide repeat-containing protein At5g08305
    Locus tag
    OSNPB_100442700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 5.5), roots after flowering (RPKM 3.8) and 6 other tissues See more
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    Genomic context

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    See LOC4348732 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (16582423..16586881)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (15918244..15922316)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 86A1 Neighboring gene cell division control protein 48 homolog E Neighboring gene serine/threonine-protein kinase PCRK1 Neighboring gene ABC transporter G family member 25 Neighboring gene uncharacterized LOC4348735

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g08305
    Names
    Os10g0442700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      16582423..16586881
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021038.2 → XP_025876823.1  pentatricopeptide repeat-containing protein At5g08305

      UniProtKB/TrEMBL
      A2Z7V1, Q0IXF2, Q7XE15
      Conserved Domains (2) summary
      sd00004
      Location:270 → 297
      PPR; PPR repeat [structural motif]
      cl25449
      Location:79 → 478
      PPR_2; PPR repeat family

    2. XM_026021039.2 → XP_025876824.1  pentatricopeptide repeat-containing protein At5g08305

      UniProtKB/TrEMBL
      A2Z7V1, Q0IXF2, Q7XE15
      Conserved Domains (2) summary
      sd00004
      Location:270 → 297
      PPR; PPR repeat [structural motif]
      cl25449
      Location:79 → 478
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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