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    LOC4349095 uncharacterized LOC4349095 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349095, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349095
    Gene description
    uncharacterized LOC4349095
    Locus tag
    OSNPB_100511800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349095 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (20394725..20404554)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (19703559..19713572)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene probable serine protease EDA2 Neighboring gene uncharacterized LOC136353581 Neighboring gene uncharacterized LOC9267123 Neighboring gene uncharacterized LOC9269754 Neighboring gene transfer RNA lysine (anticodon UUU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II C-terminal domain phosphoserine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cdc73/Paf1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4349095
    Names
    Os10g0511800
    Os10g0511900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      20394725..20404554
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758900.3 → XP_015614386.1  uncharacterized protein LOC4349095 isoform X1

      UniProtKB/TrEMBL
      B9G6L5
      Conserved Domains (6) summary
      smart00719
      Location:504 → 613
      Plus3; Short conserved domain in transcriptional regulators
      smart00356
      Location:1732 → 1751
      ZnF_C3H1; zinc finger
      cd15568
      Location:152 → 197
      PHD5_NSD; PHD finger 5 found in nuclear receptor-binding SET domain-containing (NSD) proteins
      pfam02201
      Location:373 → 446
      SWIB; SWIB/MDM2 domain
      pfam03326
      Location:860 → 1199
      Herpes_TAF50; Herpesvirus transcription activation factor (transactivator)
      cl00072
      Location:784 → 835
      GYF; GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.

    2. XM_015758901.3 → XP_015614387.1  uncharacterized protein LOC4349095 isoform X2

      UniProtKB/TrEMBL
      B9G6L5
      Conserved Domains (6) summary
      smart00719
      Location:504 → 613
      Plus3; Short conserved domain in transcriptional regulators
      PHA03307
      Location:1335 → 1647
      PHA03307; transcriptional regulator ICP4; Provisional
      cd15568
      Location:152 → 197
      PHD5_NSD; PHD finger 5 found in nuclear receptor-binding SET domain-containing (NSD) proteins
      pfam02201
      Location:373 → 446
      SWIB; SWIB/MDM2 domain
      pfam18345
      Location:1730 → 1748
      zf_CCCH_4; Zinc finger domain
      cl00072
      Location:781 → 832
      GYF; GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
    Nucleotide Protein
    Heading Accession and Version

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