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    LOC4348671 BTB/POZ and MATH domain-containing protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348671, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4348671
    Gene description
    BTB/POZ and MATH domain-containing protein 1
    Locus tag
    OSNPB_100425900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in milk grains (RPKM 1.2), flower buds (RPKM 1.0) and 6 other tissues See more
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    Genomic context

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    See LOC4348671 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (15801546..15803282)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (15137784..15140304)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ and MATH domain-containing protein 1-like Neighboring gene BTB/POZ and MATH domain-containing protein 1-like Neighboring gene uncharacterized LOC107279064 Neighboring gene protein NEN1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ and MATH domain-containing protein 1
    Names
    Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain MBTB43
    Os10g0425900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      15801546..15803282
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758108.3 → XP_015613594.1  BTB/POZ and MATH domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8J8Y2W3, A3C367, Q0IXK9, Q337Y9, Q7XEE0
      Conserved Domains (3) summary
      cd00121
      Location:31 → 159
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cl38908
      Location:184 → 295
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      cl28903
      Location:296 → 358
      BACK; BACK (BTB and C-terminal Kelch) domain
    Nucleotide Protein
    Heading Accession and Version

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