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    LOC4349213 NAC domain-containing protein 105 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349213, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349213
    Gene description
    NAC domain-containing protein 105
    Locus tag
    OSNPB_100532000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (21363476..21370044)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20671776..20678364)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g12460 Neighboring gene bZIP transcription factor 29 Neighboring gene lysine-specific histone demethylase 1 homolog 3 Neighboring gene uncharacterized LOC112936599 Neighboring gene probable lysophospholipase BODYGUARD 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Transcriptional activation of secondary wall biosynthesis by rice and maize NAC and MYB transcription factors. Zhong R, et al. Plant Cell Physiol, 2011 Oct. PMID 21908441
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NAC domain-containing protein 105
    Names
    Os10g0532000
    secondary wall NAC transcription factor 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      21363476..21370044
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758379.3 → XP_015613865.1  NAC domain-containing protein 105

      UniProtKB/TrEMBL
      Q0IW56, Q109C3
      Conserved Domains (1) summary
      pfam02365
      Location:9 → 136
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version

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