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    LOC4336026 PLAT domain-containing protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336026, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336026
    Gene description
    PLAT domain-containing protein 3
    Locus tag
    OSNPB_040456200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 4.2), leaves before flowering (RPKM 0.7) and 4 other tissues See more
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    Genomic context

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    See LOC4336026 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (23315181..23316057)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22820842..22821887)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene lipoyl synthase, mitochondrial-like Neighboring gene endoplasmic reticulum-Golgi intermediate compartment protein 3 Neighboring gene PLAT domain-containing protein 1 Neighboring gene PLAT domain-containing protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PLAT domain-containing protein 3
    Names
    Os04g0456200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      23315181..23316057
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777959.3 → XP_015633445.1  PLAT domain-containing protein 3

      UniProtKB/TrEMBL
      A0A5S6RA50, A2XU57, Q01JQ7, Q7X6J3, Q7XRE9
      Conserved Domains (1) summary
      cl00011
      Location:41 → 167
      PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
    Nucleotide Protein
    Heading Accession and Version

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