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    LOC4330479 histone-lysine N-methyltransferase SUVR5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330479, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330479
    Gene description
    histone-lysine N-methyltransferase SUVR5
    Locus tag
    OSNPB_020708500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    49D11.8; 49D11.9; 49D11.10
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    Genomic context

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    See LOC4330479 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29785994..29798667)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29294452..29307168)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330476 Neighboring gene protein KINESIN LIGHT CHAIN-RELATED 2 Neighboring gene RNA exonuclease 4 Neighboring gene uncharacterized LOC4330481

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase SUVR5
    Names
    OSJNBb0060O16.32
    OSJNBb0060O16.33
    Os02g0708500
    Os02g0708600
    putative C2H2-type zinc-finger protein
    putative SET domain protein SDG117
    putative SET-domain transcriptional regulator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      29785994..29798667
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770349.3 → XP_015625835.1  histone-lysine N-methyltransferase SUVR5 isoform X1

      Conserved Domains (3) summary
      smart00317
      Location:1450 → 1584
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      pfam05033
      Location:1311 → 1442
      Pre-SET; Pre-SET motif
      pfam11722
      Location:608 → 636
      zf-TRM13_CCCH; CCCH zinc finger in TRM13 protein

    2. XM_015770350.3 → XP_015625836.1  histone-lysine N-methyltransferase SUVR5 isoform X2

      Conserved Domains (3) summary
      smart00317
      Location:1407 → 1541
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      pfam05033
      Location:1268 → 1399
      Pre-SET; Pre-SET motif
      pfam11722
      Location:565 → 593
      zf-TRM13_CCCH; CCCH zinc finger in TRM13 protein

    RNA

    1. XR_010739735.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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