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    LOC4331337 vacuolar protein sorting-associated protein 24 homolog 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331337, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331337
    Gene description
    vacuolar protein sorting-associated protein 24 homolog 1
    Locus tag
    OSNPB_030108400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 39.9), flowers (RPKM 36.5) and 6 other tissues See more
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    Genomic context

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    See LOC4331337 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (505132..506928)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (497739..499562)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271783 Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 32 Neighboring gene very-long-chain aldehyde decarbonylase GL1-10-like Neighboring gene DEAD-box ATP-dependent RNA helicase 50-like Neighboring gene uncharacterized LOC4331340

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endosome transport via multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in late endosome to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in multivesicular body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 24 homolog 1
    Names
    Os03g0108400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      505132..506928
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772910.3 → XP_015628396.1  vacuolar protein sorting-associated protein 24 homolog 1

      UniProtKB/TrEMBL
      A0A8J8XXR8, B9FAD1, Q10SX2
      Conserved Domains (1) summary
      cl21588
      Location:20 → 185
      Snf7
    Nucleotide Protein
    Heading Accession and Version

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