NAL1 Protein NARROW LEAF 1 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: NAL1
Gene description: Protein NARROW LEAF 1
Locus tag: OSNPB_040615000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: GFP; SPIKE; qFLW4; LSCHL4; OsJ_16147
Expression: Ubiquitous expression in flower buds (RPKM 10.4), flowers (RPKM 9.0) and 6 other tissues See more
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Genomic context

Location:: chromosome: 4

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	4	NC_089038.1 (31711152..31722357)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	4	NC_029259.1 (31203502..31214734)

Chromosome 4 - NC_089038.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NAL1 regulates leaf shape by affecting cell expansion in rice.
Title: Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).
NAL1 allele does not increase whole-leaf photosynthesis but plays a role in regulating spatial and temporal trade-offs among traits at the whole-plant level.
Title: Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in DNA integration	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protein NARROW LEAF 1

Names: LOC_Os04g52479; Protein GREEN FOR PHOTOSYNTHESIS; Protein QUANTITATIVE TRAIT LOCUS FOR FLAG LEAF WIDTH 4; Protein SPIKELET NUMBER; narrow leaf 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.