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    LOC4330862 protein CPR-5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330862, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330862
    Gene description
    protein CPR-5
    Locus tag
    OSNPB_020770100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1079_F11.27
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    Genomic context

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    See LOC4330862 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32964870..32967991, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32469556..32472706, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g05750, chloroplastic Neighboring gene proteasome subunit beta type-6 Neighboring gene uncharacterized LOC136355390 Neighboring gene uncharacterized LOC4330863 Neighboring gene WRKY transcription factor 72B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in leaf senescence IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in trichome morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CPR-5
    Names
    Os02g0770100
    putative HYS1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      32964870..32967991 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767592.3 → XP_015623078.1  protein CPR-5

      UniProtKB/TrEMBL
      A0A0P0VQ13, Q0DX76, Q6ZH55
    Nucleotide Protein
    Heading Accession and Version

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