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    LOC4342306 eukaryotic translation initiation factor 3 subunit C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342306, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342306
    Gene description
    eukaryotic translation initiation factor 3 subunit C
    Locus tag
    OSNPB_070124500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 37.5), leaves after flowering (RPKM 33.5) and 6 other tissues See more
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    Genomic context

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    See LOC4342306 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1285222..1289386)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1274527..1278741)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene phytosulfokines 4-like Neighboring gene small nucleolar RNA snoR8a Neighboring gene heterogeneous nuclear ribonucleoprotein 1 Neighboring gene AP2-like ethylene-responsive transcription factor CRL5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of eukaryotic translation initiation factor 3 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor 3 subunit C
    Names
    Os07g0124500
    P0474G09.113
    putative Eukaryotic translation initiation factor 3 subunit 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      1285222..1289386
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026900.2 → XP_025882685.1  eukaryotic translation initiation factor 3 subunit C

      UniProtKB/TrEMBL
      Q0D8V5, Q6Z720, Q84LG6
      Conserved Domains (2) summary
      smart00088
      Location:733 → 816
      PINT; motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
      pfam05470
      Location:43 → 659
      eIF-3c_N; Eukaryotic translation initiation factor 3 subunit 8 N-terminus

    2. XM_015791597.3 → XP_015647083.1  eukaryotic translation initiation factor 3 subunit C

      UniProtKB/TrEMBL
      Q0D8V5, Q6Z720, Q84LG6
      Conserved Domains (2) summary
      smart00088
      Location:733 → 816
      PINT; motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
      pfam05470
      Location:43 → 659
      eIF-3c_N; Eukaryotic translation initiation factor 3 subunit 8 N-terminus
    Nucleotide Protein
    Heading Accession and Version

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