LOC4329684 putative 12-oxophytodienoate reductase 8 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4329684
Gene description: putative 12-oxophytodienoate reductase 8
Locus tag: OSNPB_020559400
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OPR7; OPR8; OsOPR8
Expression: Broad expression in flower buds (RPKM 15.4), flowers (RPKM 7.3) and 5 other tissues See more
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Genomic context

Location:: chromosome: 2

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	2	NC_089036.1 (21708122..21711517, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (21221534..21231370, complement)

Chromosome 2 - NC_089036.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables FMN binding	IEA Inferred from Electronic Annotation more info	PubMed
enables oxidoreductase activity	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: putative 12-oxophytodienoate reductase 8

Names: LOC_Os02g35310; OPDA-reductase 8; P0435E12.12; putative 12-oxophytodienoic acid reductase

NP_001403606.1

EC 1.3.1.-

NP_001403607.1

EC 1.3.1.-

XP_025878370.2

EC 1.3.1.-

XP_066163116.1

EC 1.3.1.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001416677.1 → NP_001403606.1 putative 12-oxophytodienoate reductase 8 isoform 1

Status: VALIDATED

Source sequence(s)

AK059887, CI590140

UniProtKB/Swiss-Prot

A0A0P0VKL6, Q0E0C6, Q6YU32

UniProtKB/TrEMBL

A0A0P0VKH1
NM_001416678.1 → NP_001403607.1 putative 12-oxophytodienoate reductase 8 isoform 2

Status: VALIDATED

Source sequence(s)

AK069898, AP014958, CI138253, CI590140

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089036.1 Reference ASM3414082v1 Primary Assembly

Range

21708122..21711517 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_026022585.2 → XP_025878370.2 putative 12-oxophytodienoate reductase 8 isoform X1
XM_066307019.1 → XP_066163116.1 putative 12-oxophytodienoate reductase 8 isoform X2