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    LOC4339814 uncharacterized LOC4339814 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339814, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4339814
    Gene description
    uncharacterized LOC4339814
    Locus tag
    OSNPB_050595300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339814 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29843932..29847543)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (29656549..29660318)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene sm-like protein LSM8 Neighboring gene pathogenesis-related protein 1 Neighboring gene UDP-glucose 4-epimerase 1-like Neighboring gene pathogenesis-related protein PR-1 Neighboring gene nucleoside diphosphate kinase 3-like Neighboring gene uncharacterized LOC136356509

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CO(2) -responsive CCT protein interacts with 14-3-3 proteins and controls the expression of starch synthesis-related genes. Fukayama H, et al. Plant Cell Environ, 2021 Aug. PMID 33989431
    2. CO2-responsive CONSTANS, CONSTANS-like, and time of chlorophyll a/b binding protein Expression1 protein is a positive regulator of starch synthesis in vegetative organs of rice. Morita R, et al. Plant Physiol, 2015 Apr. PMID 25717036, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CO2 -responsive CCT protein interacts with 14-3-3 proteins and controls the expression of starch synthesis-related genes.
      Title: CO(2) -responsive CCT protein interacts with 14-3-3 proteins and controls the expression of starch synthesis-related genes.
    2. CRCT is likely a positive regulator of starch accumulation in vegetative tissues, regulating coordinated expression of starch synthesis genes in response to the levels of photoassimilates.
      Title: CO2-responsive CONSTANS, CONSTANS-like, and time of chlorophyll a/b binding protein Expression1 protein is a positive regulator of starch synthesis in vegetative organs of rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of flower development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4339814
    Names
    Os05g0595300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      29843932..29847543
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783846.3 → XP_015639332.1  uncharacterized protein LOC4339814 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WRI8, A2Y864, B9FJ14, Q0DFE5
      Conserved Domains (1) summary
      pfam06203
      Location:256 → 297
      CCT; CCT motif

    2. XM_066310514.1 → XP_066166611.1  uncharacterized protein LOC4339814 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials