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    LOC4342943 ABC transporter G family member 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342943, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342943
    Gene description
    ABC transporter G family member 1
    Locus tag
    OSNPB_070288700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 4.4), leaves before flowering (RPKM 1.8) and 4 other tissues See more
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    Genomic context

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    See LOC4342943 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (11261968..11274048)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (11170833..11182974)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein SLOW GREEN 1, chloroplastic Neighboring gene putative lipid-transfer protein DIR1 Neighboring gene intracellular protein transport protein USO1-like Neighboring gene uncharacterized LOC4342944

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter G family member 1
    Names
    ABC transporter family protein-like
    B1126F07.104-1
    B1126F07.104-2
    Os07g0288700
    P0438G07.112-1
    P0438G07.112-2
    putative ABC transporter family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      11261968..11274048
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789828.3 → XP_015645314.1  ABC transporter G family member 1

      UniProtKB/TrEMBL
      B8B578, Q0D770, Q7EY81
      Conserved Domains (1) summary
      TIGR00955
      Location:145 → 712
      3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein

    RNA

    1. XR_010742863.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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