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    LOC9266999 uncharacterized LOC9266999 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266999, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9266999
    Gene description
    uncharacterized LOC9266999
    Locus tag
    OSNPB_120510000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 2.3), roots before flowering (RPKM 1.8) and 6 other tissues See more
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    Genomic context

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    See LOC9266999 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (20131357..20139171)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (19642348..19650301)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269223 Neighboring gene uncharacterized LOC136351258 Neighboring gene uncharacterized LOC9271902 Neighboring gene toMV resistant protein Tm-2 netted virescent Neighboring gene probable disease resistance protein RF9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC9266999
    Names
    Os12g0510000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      20131357..20139171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764272.3 → XP_015619758.1  uncharacterized protein LOC9266999 isoform X2

      UniProtKB/TrEMBL
      B7F7W2, C7JA27
      Conserved Domains (1) summary
      cl40481
      Location:3 → 21
      YlqF_related_GTPase; Circularly permuted YlqF-related GTPases

    2. XM_066306231.1 → XP_066162328.1  uncharacterized protein LOC9266999 isoform X3

    3. XM_066306234.1 → XP_066162331.1  uncharacterized protein LOC9266999 isoform X4

    4. XM_066306233.1 → XP_066162330.1  uncharacterized protein LOC9266999 isoform X3

    5. XM_066306230.1 → XP_066162327.1  uncharacterized protein LOC9266999 isoform X1

    RNA

    1. XR_010738281.1 RNA Sequence

    2. XR_010738282.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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