LOC4337960 uncharacterized LOC4337960 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4337960
Gene description: uncharacterized LOC4337960
Locus tag: OSNPB_050176500
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Ubiquitous expression in flower buds (RPKM 10.3), flowers (RPKM 9.4) and 6 other tissues See more
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Genomic context

Location:: chromosome: 5

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	5	NC_089039.1 (4604270..4608032, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	5	NC_029260.1 (4585162..4589008, complement)

Chromosome 5 - NC_089039.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in mitochondrial proton-transporting ATP synthase complex assembly	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in mitochondrial inner membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: uncharacterized LOC4337960

Names: Os05g0176500

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001420367.1 → NP_001407296.1 uncharacterized LOC4337960

Status: VALIDATED

Source sequence(s)

AK099352, CI147519

UniProtKB/TrEMBL

A0A0N7KK86, B8AYM0, Q0DKB9, Q6AT24

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089039.1 Reference ASM3414082v1 Primary Assembly

Range

4604270..4608032 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015781935.3 → XP_015637421.1 uncharacterized LOC4337960 isoform X1

Conserved Domains (1) summary

pfam05176
Location:1 → 209

ATP-synt_10; ATP10 protein