U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4330106 E3 ubiquitin-protein ligase RMA2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330106, updated on 1-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4330106
    Gene description
    E3 ubiquitin-protein ligase RMA2
    Locus tag
    OSNPB_020639800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 5.6), roots after flowering (RPKM 5.5) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4330106 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (26157932..26163491, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25671611..25677487, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene expansin-B16-like Neighboring gene sphingolipid 4-desaturase DES1-like Neighboring gene putative nuclear RNA export factor SDE5 Neighboring gene thioredoxin M1, chloroplastic-like Neighboring gene elicitor-responsive protein 3-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-like protein conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase RMA2
    Names
    Os02g0639800
    P0010C01.23-1
    ring domain containing protein-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      26157932..26163491 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770210.3 → XP_015625696.1  E3 ubiquitin-protein ligase RMA2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VMF5, A3A9F9, Q6H7E5
      Conserved Domains (1) summary
      PLN03208
      Location:46 → 286
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional

    2. XM_015770211.3 → XP_015625697.1  E3 ubiquitin-protein ligase RMA2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VMF5, A3A9F9, Q6H7E5
      Conserved Domains (1) summary
      PLN03208
      Location:46 → 286
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional

    3. XM_026022730.2 → XP_025878515.1  E3 ubiquitin-protein ligase RMA2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VMF5, A3A9F9, Q6H7E5
      Conserved Domains (1) summary
      PLN03208
      Location:46 → 286
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional

    4. XM_026022729.2 → XP_025878514.1  E3 ubiquitin-protein ligase RMA2 isoform X3

      Conserved Domains (1) summary
      cl28410
      Location:66 → 175
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

    5. XM_015770207.3 → XP_015625693.1  E3 ubiquitin-protein ligase RMA2 isoform X2

      Conserved Domains (1) summary
      cl28410
      Location:66 → 175
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

    6. XM_066307986.1 → XP_066164083.1  E3 ubiquitin-protein ligase RMA2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VMF5, A3A9F9, Q6H7E5

    7. XM_066307985.1 → XP_066164082.1  E3 ubiquitin-protein ligase RMA2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VMF5, A3A9F9, Q6H7E5
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials