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    LOC4342345 leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342345, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4342345
    Gene description
    leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
    Locus tag
    OSNPB_070134200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1118_D07.29
    Expression
    Biased expression in flowers (RPKM 20.3), flower buds (RPKM 18.3) and 2 other tissues See more
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    Genomic context

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    See LOC4342345 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1812362..1816103, complement)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene amino acid permease 6 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial Neighboring gene uncharacterized LOC4342347

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables receptor serine/threonine kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
    Names
    Os07g0134200
    P0507H12.14
    putative OsLRK1(receptor-type protein kinase)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1812362..1816103 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026748.1 → XP_025882533.1  leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 isoform X2

      UniProtKB/TrEMBL
      A2YHX1
      Conserved Domains (2) summary
      sd00033
      Location:95 → 119
      LRR_RI; leucine-rich repeat [structural motif]
      cl26793
      Location:27 → 964
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional

    2. XM_015789185.2 → XP_015644671.1  leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 isoform X1

      UniProtKB/TrEMBL
      A2YHX1, A3BGB9, Q69UV5, Q6ZLK5
      Conserved Domains (2) summary
      PLN00113
      Location:27 → 974
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:95 → 119
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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