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    LOC4350352 phosphoinositide phosphatase SAC7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350352, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4350352
    Gene description
    phosphoinositide phosphatase SAC7
    Locus tag
    OSNPB_110309000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350352 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (12267478..12283078, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (11786199..11801895, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136353866 Neighboring gene probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 Neighboring gene uncharacterized LOC136354159 Neighboring gene uncharacterized LOC136354160

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-4-phosphate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoinositide phosphatase SAC7
    Names
    Os11g0309000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      12267478..12283078 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759879.3 → XP_015615365.1  phosphoinositide phosphatase SAC7 isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y1T4, B8BK77, Q0IT47
      Conserved Domains (1) summary
      COG5329
      Location:68 → 511
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]

    2. XM_066305519.1 → XP_066161616.1  phosphoinositide phosphatase SAC7 isoform X2

    3. XM_066305518.1 → XP_066161615.1  phosphoinositide phosphatase SAC7 isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y1T4, Q0IT47

    4. XM_015759880.3 → XP_015615366.1  phosphoinositide phosphatase SAC7 isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y1T4, B8BK77, Q0IT47
      Conserved Domains (1) summary
      COG5329
      Location:68 → 511
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    Nucleotide Protein
    Heading Accession and Version

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