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    LOC4338594 cytochrome P450 CYP72A616 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338594, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338594
    Gene description
    cytochrome P450 CYP72A616
    Locus tag
    OSNPB_050372300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 36.3) and mature seeds (RPKM 2.6) See more
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    Genomic context

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    See LOC4338594 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (18035147..18042370)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (17934634..17941914)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene receptor-like cytoplasmic kinase 185 Neighboring gene ribosomal RNA-processing protein 14-C Neighboring gene lipase Neighboring gene uncharacterized LOC4338596

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome P450 CYP72A616
    Names
    Os05g0372300
    cytochrome P450 72A15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      18035147..18042370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781837.2 → XP_015637323.1  cytochrome P450 CYP72A616

      UniProtKB/TrEMBL
      A0A0P0WLL7, B9FP88, Q6I5Q4
      Conserved Domains (1) summary
      cl41757
      Location:89 → 514
      cytochrome_P450; cytochrome P450 (CYP) superfamily
    Nucleotide Protein
    Heading Accession and Version

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