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    LOC4345926 heme A synthase COX15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345926, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345926
    Gene description
    heme A synthase COX15
    Locus tag
    OSNPB_080496000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 19.2), leaves before flowering (RPKM 15.3) and 6 other tissues See more
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    Genomic context

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    See LOC4345926 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24622557..24626230)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24482342..24486048)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene probable galactinol--sucrose galactosyltransferase 1 Neighboring gene probable galacturonosyltransferase 4 Neighboring gene uncharacterized LOC4345927

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heme A biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heme A synthase COX15
    Names
    B1142B04.27
    Os08g0496000
    cytochrome c oxidase assembly protein COX15
    putative cytochrome c oxidase subunit 15(COX15) homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24622557..24626230
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792794.3 → XP_015648280.1  heme A synthase COX15

      UniProtKB/TrEMBL
      A0A0P0XH68, A2YWL5, A3BUF9, Q6Z5C5
      Conserved Domains (1) summary
      cl19388
      Location:120 → 466
      COX15-CtaA; Cytochrome oxidase assembly protein
    Nucleotide Protein
    Heading Accession and Version

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