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    LOC4346513 protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346513, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346513
    Gene description
    protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic
    Locus tag
    OSNPB_090250700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1080A02.8
    Expression
    Broad expression in roots after flowering (RPKM 58.5), leaves before flowering (RPKM 46.1) and 4 other tissues See more
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    Genomic context

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    See LOC4346513 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (8201625..8209454)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (3855168..3862971)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936458 Neighboring gene uncharacterized LOC136351828 Neighboring gene ABC transporter G family member 1 Neighboring gene probable L-type lectin-domain containing receptor kinase S.7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in membrane lipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of response to reactive oxygen species IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic
    Names
    ABC1 family protein-like
    Os09g0250700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      8201625..8209454
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795768.3 → XP_015651254.1  protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B8BDH0
      Conserved Domains (2) summary
      COG0661
      Location:166 → 705
      AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]
      cd05121
      Location:247 → 494
      ABC1_ADCK3-like; Activator of bc1 complex (ABC1) kinases (also called aarF domain containing kinase 3) and similar proteins

    2. XM_015795770.3 → XP_015651256.1  protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B8BDH0, B9G2C4, Q0J372, Q6K2A4
      Conserved Domains (1) summary
      COG0661
      Location:166 → 677
      AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]

    3. XM_015795769.3 → XP_015651255.1  protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B8BDH0
      Conserved Domains (2) summary
      COG0661
      Location:166 → 705
      AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]
      cd05121
      Location:247 → 494
      ABC1_ADCK3-like; Activator of bc1 complex (ABC1) kinases (also called aarF domain containing kinase 3) and similar proteins

    4. XM_066304223.1 → XP_066160320.1  protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic isoform X2

    Nucleotide Protein
    Heading Accession and Version

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