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    LOC4340110 putative disease resistance RPP13-like protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340110, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4340110
    Gene description
    putative disease resistance RPP13-like protein 3
    Locus tag
    OSNPB_060146100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340110 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2568145..2576657)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2410121..2422321)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene AP2-like ethylene-responsive transcription factor At1g16060 Neighboring gene single-stranded DNA-binding protein WHY1, chloroplastic Neighboring gene uncharacterized LOC136356917 Neighboring gene probable WRKY transcription factor 72

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative disease resistance RPP13-like protein 3
    Names
    OSJNBa0007O20.32
    Os06g0146100
    Os06g0146200
    P0036F10.15
    putative NBS-LRR disease resistance protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      2568145..2576657
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788579.3 → XP_015644065.1  putative disease resistance RPP13-like protein 3

      UniProtKB/TrEMBL
      B9FRG9, Q5VP50
      Conserved Domains (3) summary
      cd14798
      Location:26 → 124
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:729 → 753
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:167 → 417
      NB-ARC; NB-ARC domain

    2. XM_015788577.3 → XP_015644063.1  putative disease resistance RPP13-like protein 3

      UniProtKB/TrEMBL
      B9FRG9, Q5VP50
      Conserved Domains (3) summary
      cd14798
      Location:26 → 124
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:729 → 753
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:167 → 417
      NB-ARC; NB-ARC domain
    Nucleotide Protein
    Heading Accession and Version

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