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    LOC4327837 BTB/POZ domain-containing protein At5g03250 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327837, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327837
    Gene description
    BTB/POZ domain-containing protein At5g03250
    Locus tag
    OSNPB_010780600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 12.8), flower buds (RPKM 6.4) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33670398..33673679, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33064667..33067834, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326437 Neighboring gene katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 Neighboring gene secretory carrier-associated membrane protein 2-like Neighboring gene protein ULTRAPETALA 1 Neighboring gene vacuolar protein sorting-associated protein 28 homolog 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein At5g03250
    Names
    Bric-a-Brac, Tramtrack, Broad Complex BTB domain protein BTBN1
    Os01g0780600
    P0010B10.30
    putative non-phototropic hypocotyl 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33670398..33673679 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766810.2 → XP_015622296.1  BTB/POZ domain-containing protein At5g03250

      UniProtKB/TrEMBL
      A0A0P0V8Y0, B8AAF3, B9ETC4, Q5ZCG0
      Conserved Domains (2) summary
      cl38908
      Location:20 → 129
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      pfam03000
      Location:236 → 519
      NPH3; NPH3 family
    Nucleotide Protein
    Heading Accession and Version

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