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    LOC4352087 F-box/kelch-repeat protein At1g57790 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352087, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352087
    Gene description
    F-box/kelch-repeat protein At1g57790
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (13698057..13699581)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (13270143..13271836)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354545 Neighboring gene uncharacterized LOC136354546 Neighboring gene uncharacterized LOC107279711 Neighboring gene F-box/kelch-repeat protein At1g57790-like Neighboring gene transfer RNA phenylalanine (anticodon GAA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    F-box/kelch-repeat protein At1g57790

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      13698057..13699581
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764107.3 → XP_015619593.1  F-box/kelch-repeat protein At1g57790

      UniProtKB/TrEMBL
      B8BPC0, Q0INN5, Q2QSN8
      Conserved Domains (1) summary
      pfam03478
      Location:306 → 347
      DUF295; Protein of unknown function (DUF295)
    Nucleotide Protein
    Heading Accession and Version

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