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    LOC4346491 DNA-directed RNA polymerase 1B, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346491, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346491
    Gene description
    DNA-directed RNA polymerase 1B, mitochondrial
    Locus tag
    OSNPB_090246200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RpoT1; OJ1058_F03.15-1
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    Genomic context

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    See LOC4346491 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (7802338..7814102, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (3456034..3467831, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278963 Neighboring gene uncharacterized LOC4346489 Neighboring gene probable 2-oxoglutarate-dependent dioxygenase At3g50210 Neighboring gene uncharacterized LOC9271578 Neighboring gene uncharacterized LOC9272125

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a rice nuclear-encoded plastid RNA polymerase gene OsRpoTp. Kusumi K, et al. Plant Cell Physiol, 2004 Sep. PMID 15509842
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial DNA-directed RNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase 1B, mitochondrial; DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
    Names
    OSJNBa0069P02.30-1
    Os09g0246200
    T7 bacteriophage-type single subunit RNA polymerase
    putative phage-type RNA polymerase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      7802338..7814102 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756870.3 → XP_015612356.1  DNA-directed RNA polymerase 2, chloroplastic/mitochondrial isoform X2

      UniProtKB/TrEMBL
      B9G2A5, Q6K326, Q6K4L7
      Conserved Domains (1) summary
      COG5108
      Location:178 → 948
      RPO41; Mitochondrial DNA-directed RNA polymerase [Transcription]

    2. XM_015756868.3 → XP_015612354.1  DNA-directed RNA polymerase 1B, mitochondrial isoform X1

      UniProtKB/TrEMBL
      B9G2A5, Q0J392, Q84LK6
      Conserved Domains (2) summary
      COG5108
      Location:178 → 1016
      RPO41; Mitochondrial DNA-directed RNA polymerase [Transcription]
      pfam00940
      Location:626 → 1016
      RNA_pol; DNA-dependent RNA polymerase
    Nucleotide Protein
    Heading Accession and Version

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