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    LOC4349716 probable auxin efflux carrier component 1b [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349716, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4349716
    Gene description
    probable auxin efflux carrier component 1b
    Locus tag
    OSNPB_110137000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PIN1B; OsPIN1b; OsPIN1c; OsJ_32878
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LOC4349716 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (1746996..1750295, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (1702210..1705641, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272420 Neighboring gene dual specificity protein phosphatase 12 Neighboring gene U3 small nucleolar ribonucleoprotein protein MPP10 Neighboring gene uncharacterized LOC4349718 Neighboring gene uncharacterized LOC4349719

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    probable auxin efflux carrier component 1b
    Names
    LOC_Os11g04190
    auxin efflux carrier

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423148.1NP_001410077.1  probable auxin efflux carrier component 1b

      Status: VALIDATED

      Source sequence(s)
      AK103181, CI091644, CI137790
      UniProtKB/Swiss-Prot
      D5A7I6, P0C0X5, Q2RAU7
      UniProtKB/TrEMBL
      B8BIY9, B8BIZ4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      1746996..1750295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)